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Discover 22 open source projects

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Developer-Y/cs-video-courses

Curated list of CS video courses

76.2K
Active
Tutorials & Courses
#computer-science#algorithms#deep-learning

K-Dense-AI/claude-scientific-skills

A library of ready-to-use scientific skills for the Claude AI assistant, focused on bioinformatics, drug discovery, and scientific computing.

13.2K
Active
Python
LLM Wrappers & SDKs
API Frameworks
Python
#claude#scientific-computing#bioinformatics

deepchem/deepchem

An open-source Python library for democratizing deep learning in drug discovery, quantum chemistry, materials science, and biology.

6.6K
Active
Python
ML Ops
Databases
#drug-discovery#quantum-chemistry#materials-science

microsoft/BioGPT

BioGPT is a Python library for using the BioGPT language model for various biological and biomedical applications.

4.5K
Archived
Python
LLM Frameworks
API Frameworks
Python
#language-model#biology#biomedical

Revolutionary-Games/Thrive

An open-source sandbox simulation game focused on the evolution of life, built with the Godot game engine.

3.4K
Active
C#
Sandbox
Simulation
Godot
#biology#evolution#strategy

NAalytics/Assemblies-of-putative-SARS-CoV2-spike-encoding-mRNA-sequences-for-vaccines-BNT-162b2-and-mRNA-1273

An open-source project that provides experimental sequence information for the RNA components of the Moderna and Pfizer/BioNTech COVID-19 vaccines.

3.4K
Archived
File Storage
Databases
#covid-19#vaccines#rna-sequencing

davidrmiller/biosim4

A C++ library for simulating biological evolution, not focused on AI coding tools.

3.3K
Archived
C++
Simulation
Biology
#biology#evolution#simulation

openworm/OpenWorm

A repository for the OpenWorm software stack, a biology simulation platform focused on the C. elegans organism.

2.9K
Stable
Python
Backend Frameworks
Databases
#biology#simulation#elegans

gokceneraslan/awesome-deepbio

A curated list of deep learning applications in computational biology, useful for bioinformatics developers.

2.0K
Archived
Computer Vision
Databases
#bioinformatics#deep-learning#computational-biology

evo-design/evo

This is a Jupyter Notebook project focused on biological foundation modeling from molecular to genome scale.

1.5K
Stable
Jupyter Notebook
Computer Vision
Databases
#biology#modeling#jupyter-notebook

gcorso/DiffDock

An implementation of DiffDock, a diffusion-based molecular docking method for binding prediction.

1.4K
Experimental
Python
Computational Biology
Diffusion Models
Python
#binding#docking#equivariance

ai-boost/awesome-ai-for-science

A curated list of awesome AI tools, libraries, papers, datasets, and frameworks for scientific discovery.

1.3K
Active
AI for Science
Awesome Lists
#ai-for-science#bioinformatics#awesome-list

google/neuroglancer

Neuroglancer is a WebGL-based viewer for volumetric data, enabling visualization and analysis of 3D biological and scientific data.

1.3K
Active
TypeScript
Animation & Motion
Charts & Visualization
TypeScript
#visualization#3d-data#scientific-data

mims-harvard/TDC

A multimodal framework for drug discovery and therapeutic science research.

1.2K
Experimental
Jupyter Notebook
LLM Frameworks
Databases
#bioinformatics#cheminformatics#drug-discovery

BradyAJohnston/MolecularNodes

A Python-based toolbox for creating molecular animations in Blender, powered by Geometry Nodes.

1.2K
Active
Python
Animation & Motion
Databases
#biochemistry#blender#molecular-graphics

scikit-bio/scikit-bio

A versatile Python library for bioinformatics, providing data structures, algorithms, and educational resources.

1.2K
Active
Python
ORMs & Query Builders
CLI Tools
#bioinformatics#computational-biology#data-structures

a-r-j/graphein

Graphein is a Python library for building and analyzing protein interaction graphs for drug discovery and computational biology.

1.2K
Active
Jupyter Notebook
Computer Vision
Databases
PyTorch
#bioinformatics#computational-biology#protein-structure

brian-team/brian2

Brian is a free, open-source simulator for spiking neural networks, used in computational neuroscience.

1.1K
Active
Python
Agents & Orchestration
Computational Neuroscience
Python
#brian#simulation#spiking-neural-networks

PaddlePaddle/PaddleHelix

A bio-computing platform for large-scale representation learning and multi-task deep learning on molecular and biological data.

1.1K
Stable
Python
Machine Learning
Databases
Python
#biocomputing#representation-learning#deep-learning

sib-swiss/training-collection

A collection of bioinformatics training materials written in Python for developers working with biological data.

1.1K
Active
Python
Tutorials & Courses
Databases
#bioinformatics#training#python
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