Explore Projects
Discover 26 open source projects
Showing 1-20 of 26 projects
K-Dense-AI/claude-scientific-skills
A library of ready-to-use scientific skills for the Claude AI assistant, focused on bioinformatics, drug discovery, and scientific computing.
biopython/biopython
Biopython is a set of Python modules that provide a wide range of functionality for bioinformatics, including DNA/RNA/protein sequence analysis, phylogenetics, and more.
danielecook/Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software for developers working in life sciences and genomics.
google/deepvariant
DeepVariant is an AI-powered bioinformatics pipeline for calling genetic variants from DNA sequencing data.
broadinstitute/gatk
Official code repository for the Genome Analysis Toolkit (GATK), a bioinformatics library for working with next-generation DNA sequencing data.
materialsproject/pymatgen
A robust Python library for materials analysis and computational materials science.
galaxyproject/galaxy
An open-source, community-driven platform for data-intensive scientific analysis and visualization.
lh3/bwa
A fast and accurate short-read sequence aligner written in C for genomics applications.
scverse/scvi-tools
A Python library for deep probabilistic analysis of single-cell and spatial omics data.
evo-design/evo
This is a Jupyter Notebook project focused on biological foundation modeling from molecular to genome scale.
peteanderson80/bottom-up-attention
Bottom-up attention model for image captioning and visual question answering, built on Faster R-CNN and Visual Genome.
griffithlab/rnaseq_tutorial
An educational resource for learning RNA-seq analysis including cloud computing, data formats, and visualization.
crazyhottommy/getting-started-with-genomics-tools-and-resources
A collection of Unix, R, and Python tools for bioinformatics and data science projects.
vgteam/vg
A C++ library for working with genome variation graphs, enabling advanced genomics applications.
greenelab/deep-review
A collaborative deep learning review paper focused on genomics and precision medicine.
EvoMap/evolver
Self-evolving AI agent framework using Genome Evolution Protocol for autonomous agent improvement
pachterlab/gget
gget is a Python library that enables efficient querying of genomic reference databases like NCBI, Ensembl, and UniProt.
primaryobjects/AI-Programmer
Automatically generate programs using AI and genetic algorithms, with tutorials and examples.
quinlan-lab/applied-computational-genomics
This is an applied computational genomics course, not a developer discovery platform for vibe coders.
kblin/ncbi-genome-download
Scripts to download genomes from the NCBI FTP servers for bioinformatics and genomics research.
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