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google/deepvariant

DeepVariant is an AI-powered bioinformatics pipeline for calling genetic variants from DNA sequencing data.

3.6K

Stable

Python

Bioinformatics

API Frameworks

TensorFlow

#bioinformatics#genomics#deep-learning

broadinstitute/gatk

Official code repository for the Genome Analysis Toolkit (GATK), a bioinformatics library for working with next-generation DNA sequencing data.

1.9K

Active

Java

ORMs & Query Builders

API Frameworks

Java

#bioinformatics#dna#genome

galaxyproject/galaxy

An open-source, community-driven platform for data-intensive scientific analysis and visualization.

1.7K

Active

Python

Databases

API Frameworks

#bioinformatics#genomics#sequencing

ngs-lang/ngs

Next Generation Shell (NGS) is a powerful, modern shell and scripting language written in C.

1.5K

Active

CLI Tools

API Frameworks

#shell#scripting#cli

ngs-doo/dsl-json

High-performance JSON library for JVM-based languages like Java, Kotlin, and Scala.

1.1K

Archived

Java

API Frameworks

ORMs & Query Builders

Java

#json#high-performance#kotlin

CJ-Chen/TBtools-II

A powerful GUI/CLI tool for biologists to work with NGS data, not a vibe coder tool.

1.0K

Active

Shell

Databases

CLI Tools

#bioinformatics#ngs#genomics

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