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google-deepmind/alphafold

Open-source code for AlphaFold 2, a powerful AI system for predicting protein structures.

14.3K
Active
Python
Computer Vision
Python
#protein-structure-prediction#machine-learning#deep-learning

google-deepmind/alphafold3

AlphaFold 3 is a Python-based inference pipeline for protein structure prediction using deep learning.

7.7K
Active
Python
Inference
Computer Vision
#protein-structure-prediction#deep-learning#computer-vision

biopython/biopython

Biopython is a set of Python modules that provide a wide range of functionality for bioinformatics, including DNA/RNA/protein sequence analysis, phylogenetics, and more.

4.9K
Active
Python
Databases
Backend Frameworks
Python
#bioinformatics#genomics#protein-analysis

facebookresearch/esm

Evolutionary Scale Modeling (ESM): Pretrained language models for proteins in Python.

4.0K
Archived
Python
LLM Frameworks
API Frameworks
Python
#machine-learning#natural-language-processing#bioinformatics

RosettaCommons/RFdiffusion

Code for running RFdiffusion, a machine learning library for protein structure prediction.

2.8K
Stable
Python
LLM Frameworks
Databases
Python
#machine-learning#protein-structure#bioinformatics

Peldom/papers_for_protein_design_using_DL

A curated list of papers about using deep learning for protein design.

1.9K
Active
ML Ops
Tutorials & Courses
#protein-design#deep-learning#machine-learning

yangkky/Machine-learning-for-proteins

A repository of machine learning papers focused on proteins, useful for researchers and developers in the field.

1.7K
Archived
Machine Learning Ops
Tutorials & Courses
#machine-learning#proteins#research

bytedance/Protenix

A trainable PyTorch reproduction of the AlphaFold 3 protein structure prediction model.

1.7K
Stable
Python
LLM Frameworks
Computer Vision
PyTorch
#protein-structure-prediction#deep-learning#bioinformatics

dauparas/ProteinMPNN

Open-source code for the ProteinMPNN paper, a machine learning model for protein structure prediction.

1.6K
Archived
Jupyter Notebook
LLM Frameworks
API Clients & Testing
Jupyter Notebook
#machine-learning#protein-structure#scientific-computing

agemagician/ProtTrans

A state-of-the-art pretrained language model for proteins, enabling advanced AI-powered protein analysis.

1.3K
Experimental
Jupyter Notebook
LLM Frameworks
#protein#bioinformatics#transformers

BradyAJohnston/MolecularNodes

A Python-based toolbox for creating molecular animations in Blender, powered by Geometry Nodes.

1.2K
Active
Python
Animation & Motion
Databases
#biochemistry#blender#molecular-graphics

steineggerlab/foldseek

Foldseek is a fast and sensitive tool for comparing large sets of protein structures, enabling rapid bioinformatics analysis.

1.2K
Active
C
API Frameworks
Databases
#alignments#bioinformatics#clustering

a-r-j/graphein

Graphein is a Python library for building and analyzing protein interaction graphs for drug discovery and computational biology.

1.2K
Active
Jupyter Notebook
Computer Vision
Databases
PyTorch
#bioinformatics#computational-biology#protein-structure

kexinhuang12345/DeepPurpose

A deep learning toolkit for drug discovery, drug-target interaction, and protein function prediction.

1.1K
Archived
Jupyter Notebook
ML Ops
Databases
Jupyter Notebook
#bioinformatics#drug-discovery#drug-target-interaction

PaddlePaddle/PaddleHelix

A bio-computing platform for large-scale representation learning and multi-task deep learning on molecular and biological data.

1.1K
Stable
Python
Machine Learning
Databases
Python
#biocomputing#representation-learning#deep-learning

Ligo-Biosciences/AlphaFold3

Open-source implementation of the AlphaFold3 deep learning model for protein structure prediction.

1.0K
Archived
Python
LLM Frameworks
Computer Vision
Python
#protein-structure-prediction#deep-learning#bioinformatics

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